Scaffold Ga0068503

Basic Information
Taxon OID	3300006340 Open in IMG/M
Scaffold ID	Ga0068503_10270492 Open in IMG/M
Source Dataset Name	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Hawaii
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006340 Open in IMG/M

Scaffold ID

Ga0068503_10270492 Open in IMG/M

Source Dataset Name

Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Hawaii

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3397
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (63.64%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

3397

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (63.64%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	22.75	Long. (^o)	-158.0	Alt. (m)	Depth (m)	770
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

22.75

Long. (^o)

-158.0

Alt. (m)

Depth (m)

770

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005103	Metagenome / Metatranscriptome	412	Y
F005400	Metagenome / Metatranscriptome	402	Y
F008155	Metagenome / Metatranscriptome	338	Y
F018198	Metagenome	236	Y
F039182	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068503_1027049210	F008155	AGAAG	MTPEHQHLAALVYDIGLKKQIEERVEAKYSKRIEYLVNANNELMYELEQCELECYGRGYEGTTTTR*
Ga0068503_1027049211	F018198	N/A	ATVRIYIDGKEMLYSHQNIVAAINSFLPYLTNDDLDELMKTFATLKDHRRQKEYLAHLEAKVIPIQKNRHDT*
Ga0068503_102704923	F005400	GGA	MEEGMREQPQLGKNYRGFKDLTHTNMCYRCDYCDQGYQNIYWLRQLAIEYFICDNCKEYYKLTVEDLFELQYVQNRQEWKDANCSAKTMFFPYPIGFDD*
Ga0068503_102704924	F008155	N/A	MTPEHQQLATLVYDIGMKKQIEERVEAKYLKRIEYLVNANNELMYELEQCELECYGRGYEGTTTTG*
Ga0068503_102704925	F005103	GGA	MKKEEDNEIQIYINKKEMLYSHQNMVRAINSFLPYLSKIDLTELGQDILDLMDHREKKEAESKLEVEKHSWPYPDTINKQTQHDDT*
Ga0068503_102704927	F039182	GAGG	MIKWIFIIAIALSLNGCADTADAEDSTATTPAEQQQEADKEVSDDTVWAAIVMTWNPVVRTIDKEFSSEVDCWNYYEGGTGESKFGSQHLDHQGNTPTKDFHFGKMDHREYPIRTYRGINDEQGQVWLTCDIKGRYEGL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0068503_10270492

Overview

Ecosystem & Geography

Associated Families

Sequences