NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068503_10303630

Scaffold Ga0068503_10303630


Overview

Basic Information
Taxon OID3300006340 Open in IMG/M
Scaffold IDGa0068503_10303630 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2581
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)770
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018553Metagenome / Metatranscriptome234Y
F022673Metagenome213Y
F072444Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0068503_103036303F022673GGAGGMKREQIVSPRVEIAEKIHEELLVSLELERKLLKKELTLQETMTERVEVRKDLIKCERKIKDLTEQLQKENNRSKGTKWNQQS*
Ga0068503_103036304F072444N/AMPERENNSFWEIAEIIDREMSILRKMRPVGPKEKALLKKMTEDKEKEHEKRTNSQP*
Ga0068503_103036307F018553AGGMLCIPRLRIAILNEEIALWEKRLCDNPDDIPYLGYIRTTLRGRVKELEKEEKNLTSLSEADKL*
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Institute for Fundamental Biomedical Research
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