NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068503_10308783

Scaffold Ga0068503_10308783


Overview

Basic Information
Taxon OID3300006340 Open in IMG/M
Scaffold IDGa0068503_10308783 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4502
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (64.29%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)770
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005400Metagenome / Metatranscriptome402Y
F008155Metagenome / Metatranscriptome338Y
F013899Metagenome / Metatranscriptome267Y
F015350Metagenome255Y
F032036Metagenome / Metatranscriptome181N

Sequences

Protein IDFamilyRBSSequence
Ga0068503_1030878310F013899N/ALSAAINNMFPDTSEIEEGEKGQFELFQSGVSFMKAGHGKFFDLEDVKKKLTESGQDLFTNR*
Ga0068503_1030878312F008155GAGMKKRTNDKHQRLAALVYDIGLKKQIEERVEAKYSKRIEYLVNANNELMNKLEECEKECYGRGV*
Ga0068503_1030878313F005400GGAMTREWKCTDAHPNSPPLGKNYRGFKDLTDTNMCYRCDYCDQPYQNIYWLRQLAIEYFICDNCKEYYKLTVEDLFKLQYVQNRQEWQDANSSARFFPYPIGFDT*
Ga0068503_103087837F032036GGAMKWIILVYLTIAAGTTEGDISYTRLEHPVKDFQECIDIEQQINDIIHKGRESETKYVRFLYWEYKNMLHEIKAECIYADSPVSNPKWFSEK*
Ga0068503_103087838F015350N/AMKKVVKWLIIIVMAILVGWQYDAFQKNLHEIESRIKKFESVDLFNHVESVDILNKKQMELQALEKEIKEKFVIQERELRTQVKTIETKLQKLRSELNDGLTKIERNVSTIDSVVDEKFKTLWMMINNK*
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