NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068503_10431969

Scaffold Ga0068503_10431969


Overview

Basic Information
Taxon OID3300006340 Open in IMG/M
Scaffold IDGa0068503_10431969 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3261
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)770
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002874Metagenome / Metatranscriptome524Y
F012919Metagenome276Y
F038414Metagenome166Y
F059074Metagenome134N
F105371Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0068503_1043196911F059074GAGMEIDLSLNRSLEELVSSYFEAYEAGMGCDSFLAVNTNATEKDVSCYYVLENYLSDMGAI*
Ga0068503_104319693F012919GGAGMKISRKKLNLEIVKYLKTGGKITKLPDGPDYHFQPYGVRVTPGDPKVDLTVSDTPTTKQQISYVEKHSL*
Ga0068503_104319694F038414GAGMTRKEQRDNTINELYKKRTSPKTIQIQASKTARRQVEWFWISISNEEGVGQGTYDVGRRAMKRERLADKKLRAKQAKAAKLS*
Ga0068503_104319695F002874GAGGMEEKIDLSLNRSLPELESSYWEFIDATEGEDSSRWSKSVQEDLSALEGYLMKMDAI*
Ga0068503_104319698F105371GAGMNKIEFKFGRKVVMTFDNASDANVLLRKLIAIRNDDSNWEVGEYTMGNNIEIGLIAAFKIEELLEKVVDVFDSLSIWVNGNKVRKVWSKGF*
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