Basic Information | |
---|---|
Taxon OID | 3300006340 Open in IMG/M |
Scaffold ID | Ga0068503_10442701 Open in IMG/M |
Source Dataset Name | Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Hawaii |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 2037 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (42.86%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 22.75 | Long. (o) | -158.0 | Alt. (m) | Depth (m) | 770 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F013899 | Metagenome / Metatranscriptome | 267 | Y |
F015350 | Metagenome | 255 | Y |
F021178 | Metagenome | 220 | Y |
F032036 | Metagenome / Metatranscriptome | 181 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0068503_104427011 | F013899 | N/A | LSASINSLFPDTCAIEEGETGQFELFQSGKSFMKAGHGKFFDLEDVKKKLTESGQDLFTNR* |
Ga0068503_104427012 | F015350 | N/A | MKKVVKWLIIIVMVILVGWQYDAFQKNLHEVESRIKKFESVDLFNILEQISLAHIESVESVDILNKKQMEVQALEKEIKEKFTIQERELRAQVKTIETKLQKLRSELHDGLTKIERNVSTIDSVVDEKFKTLWMMINNK* |
Ga0068503_104427013 | F032036 | GGAG | MKWIILVYLTIAAGTTEGDIRYTRLEHPAKDFQECIDIEQQINDIIHRGRESETKYVRFLYWEYKNMLHEIKAECVYADSPVSNPKWFSEK* |
Ga0068503_104427017 | F021178 | N/A | VKNDLGPYKKGLTTRELNKAWSWLGKSIGGKEKSLIIKDYIDGMEKIMKKHSKSLRSVLTDYTKKRTLEPDPDSGDVAMWDELVVNNFTIQKIHVGPEFSPDFAPLEKGEGGERMYTFGDRDADIEGFPFELYYEVGDMVDYITRTVQKIKL* |
⦗Top⦘ |