NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068503_10458299

Scaffold Ga0068503_10458299


Overview

Basic Information
Taxon OID3300006340 Open in IMG/M
Scaffold IDGa0068503_10458299 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2832
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (41.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)770
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000563Metagenome1022Y
F000937Metagenome828Y
F028527Metagenome191N

Sequences

Protein IDFamilyRBSSequence
Ga0068503_104582993F000937N/AMVKEIVLIILLINGELSLPSFPFKGTVMECLDHGDKMRVELATYNEERNAWFLNDGSGTWQGFICE*
Ga0068503_104582995F000563AGAAGMRYKFKVYEEGKEIEDKEAMSFKKLLKSLVNPNPKWTGWIAYKNKKDRYVKHSILNGKRI
Ga0068503_104582996F028527N/AMKLDTWLDKTYKLRAETAVGPKVMWGDGKKHGTNEIYFNKWLGTPKYDNGLDILFKRGYSPIDALVEWLRYTPWKKKWGRKKKK*
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