NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0099693_1019397

Scaffold Ga0099693_1019397


Overview

Basic Information
Taxon OID3300006345 Open in IMG/M
Scaffold IDGa0099693_1019397 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0075m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3495
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)75
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001479Metagenome / Metatranscriptome687Y
F001504Metagenome / Metatranscriptome681Y
F049702Metagenome / Metatranscriptome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0099693_101939711F049702AGGGGGMTLIDFDKKELHDIYSSLQYTRLEIGFENKSEEELYDRLTKLMDKVAKLRQVCDCKENVS
Ga0099693_10193973F001479AGGAGMSKEMLFLCDVYDAWLSKNKLPHRCASEILYGADTMNKLTVNQSYWLENFISTWDIISQNT*
Ga0099693_10193979F001504N/AMNQNTEHFYAVQSFLEDDELHKIWNIIEIAMEREGYDVSNAELSMKLFDPELTETIGFYNK*
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Institute for Fundamental Biomedical Research
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