NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0099693_1021360

Scaffold Ga0099693_1021360


Overview

Basic Information
Taxon OID3300006345 Open in IMG/M
Scaffold IDGa0099693_1021360 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0075m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12326
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (67.57%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)75
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002137Metagenome / Metatranscriptome590Y
F029472Metagenome / Metatranscriptome188N
F033077Metagenome / Metatranscriptome178Y
F051209Metagenome / Metatranscriptome144N
F056680Metagenome / Metatranscriptome137N

Sequences

Protein IDFamilyRBSSequence
Ga0099693_10213602F002137AGGAGMKVKELIKALSYYHGDDDITFYFLKNDTLTNCQLEDIGFFSDTMGVELTIQDTSEIQEEVDV*
Ga0099693_102136024F029472N/AMLSRKTIENLTDKLMVEVANYVTEDPRFTELLNELVPEAIDLELGQVDDYSVVQIITAIQQHLRCSPNHSQVHYPRCPL*
Ga0099693_102136025F033077N/AMTTPQPSNPVPTYKVLRLTTEGWTDFDSQTAVNLTKEQCDQVLKNLTQLEGIDFRELKAVRDN*
Ga0099693_102136028F056680N/AMEYDYEFMWDYEISVHDDLDERVYTYAELDENYARRESTNFQTLAYMHYAC*
Ga0099693_102136034F051209N/AMIDYYCKQKSIQMIFTHTWENETIFHEAYVTDEKFFNVAIREVTEGGDPMEDFVDYDPFHGASDDQLTEICNDIYDFLLLGTLNA*
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