NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0099693_1039192

Scaffold Ga0099693_1039192


Overview

Basic Information
Taxon OID3300006345 Open in IMG/M
Scaffold IDGa0099693_1039192 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0075m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12373
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (69.44%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)75
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003869Metagenome / Metatranscriptome464Y
F014026Metagenome / Metatranscriptome266Y
F058219Metagenome / Metatranscriptome135N

Sequences

Protein IDFamilyRBSSequence
Ga0099693_10391922F058219AGGAGMSKSKKQLKKDLKYLKKHLDDNKEINQIIKHTEKIGISSAQYFCEEFVFIPDGETPEECARFHDVEYFDITEFNYHHWIGNKMEDY*
Ga0099693_103919221F014026GGAGGMEMKQIKETYINTLVDSMSLEDLQQYVRNDMADFLYNCNEIGVIQNEFLIKIEHTLDEQFFNKFVKQSEGKIKWK*
Ga0099693_10391927F003869GGAGGMAKRQYKRTHFYSIASMMTDEEVHQVWEIVGNALDRNGFTDADGELSIRVYDETLKKNVVNVIDKSLEVN*
Ga0099693_10391929F003869GGAGMAKRQNYKRIYHYSIAGMLTDEEVHKVWEIVGNALDRNGFVDADGELSIRVYDETLTKNVRITPKV*
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