Scaffold Ga0099697_1186008

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0099697_1186008

Scaffold Ga0099697_1186008

Overview

Basic Information
Taxon OID	3300006347 Open in IMG/M
Scaffold ID	Ga0099697_1186008 Open in IMG/M
Source Dataset Name	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_1000m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Hawaii
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	735
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	22.75	Long. (^o)	-158.0	Alt. (m)		Depth (m)	1000
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000929	Metagenome / Metatranscriptome	830	Y
F034956	Metagenome / Metatranscriptome	173	Y
F082821	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099697_11860081	F034956	N/A	MVHIQMKCNHLKIVKESYGSHLRFTLQLCFDFLLLAVVSIIHGLCPWILTGKVSDRIKELNTILNER
Ga0099697_11860082	F000929	GGAG	MSNGTQLGKSLSVGHIVATVGLIIGGFTFIYDLRESVAIQDFQLDSVEKRLERVVARTDDQFGEIMDHLVRLEEKLDAMVLPNPVYQKAR*
Ga0099697_11860083	F082821	N/A	GWIDSKDGPSFGAIMYNPTKPSWTFLSFHKKEGETAVIVCAITGGTMWEIINPGDESEKLEL*

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