NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0099954_1015065

Scaffold Ga0099954_1015065


Overview

Basic Information
Taxon OID3300006350 Open in IMG/M
Scaffold IDGa0099954_1015065 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT225_1_0075m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3866
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (61.54%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)75
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004869Metagenome / Metatranscriptome420Y
F013897Metagenome / Metatranscriptome267Y
F029784Metagenome / Metatranscriptome187N

Sequences

Protein IDFamilyRBSSequence
Ga0099954_10150655F004869GGAGMSYDTEHYYALHTFLEDDELHNIWNIVEKAMNRHGYDVSNSELSMRLYDQELEENIEHDYMAEYLESLSEGKDYGSKVDALVDSMGVTENKVAQGHVRKDLDTL*
Ga0099954_10150657F029784AGGAGMCSQIYAHPVEGYKCFANANKSQGTYYTCCDLDTREIRYVTYIYDGYFMGYYLVQSATKVAENFANCQEKIFLSSASNKWPYYKGNDNEYTIDRQYPMQYQIPSLDEVEYSYLDSLLTAGTSK*
Ga0099954_10150659F013897GGAGGMNFTKDQLLALMNTIDFATDNDASYEEYTILQSGTSDLELIRDILYNEYIHQTQ*
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