NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0099954_1029463

Scaffold Ga0099954_1029463


Overview

Basic Information
Taxon OID3300006350 Open in IMG/M
Scaffold IDGa0099954_1029463 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT225_1_0075m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5320
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)75
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019327Metagenome / Metatranscriptome230Y
F032309Metagenome / Metatranscriptome180N
F046625Metagenome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0099954_10294635F019327N/AMKHYTLKPFQLESKHISQIHNIIEKVVSEKRDEYWKNYTDYSVYDQTMITVSTINDEVKAFSSIYTRDFYGDDVYRLFNRFLISDDAREDGGSKMYKGDHRFLEMIDQQVKYVKTLNPKFYFLSRQRKNTRWLRWYFDKYNKQYNENMMVSDNQYWICKGDEYGCCQTLIYPKDKIVPFKSYK*
Ga0099954_10294636F046625GGAMSGLSKETKLNRFIQVNNFLSSQELDSFNYNNKEEFKSNTGDLVLYHQELSNSILEKIKKCIGEFTIRNAHIYNLKQPYRLHCDSGYTNNSYYTIIIPLDEKPQGGLFIMNQWSDKAYSLDDYYTQDYQSVLSFEDRKEKIHEFNPDISLPNTLDFQHIKDKRGFSVKDYIQYEYNTAIMYPGKYYHCSQNVENFTSKKSLAIFTNETLYS*
Ga0099954_10294638F032309GGAMRTETKEFFDYTKSLPFKDITHFWDIPYKEMLDEVKSVDEKYWRRPFDADNDQINRMKLDDSESVNHYPGLKGDLIEAHGWKSLCFLNETGDSKDQITRFPPVFNTAGDYKETLKYFLNNRKWTNVAEFSPTLVKFFKEVISKYMHVGQIFVTRLEGGGVITEHNDIPEDSKHLLDGEQVHMFDMLNTFNLCLNHVKSCYSVFDNKVMPAYDGCLRWTNVGKKHWVVNMNRQPQYQIIWQGIYKKQFRQLVMENK*
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