Scaffold Ga0075498_1162217

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0075498_1162217

Scaffold Ga0075498_1162217

Overview

Basic Information
Taxon OID	3300006378 Open in IMG/M
Scaffold ID	Ga0075498_1162217 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_>0.8_RNA1 (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	591
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware
Coordinates	Lat. (^o)	39.283	Long. (^o)	-75.3633	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020364	Metatranscriptome	224	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075498_11622171	F020364	N/A	KQIQDSEVQIKRAGEQREAENGEYQSVVADQRATQNILEKALQKLKDFYEKGIGKAVLLQRHEQEPPVKFNSYKTNEGASPVIGLIEQIIEDSKALENEVVGAESKAQAEYETFVKDSNNMIRNLQEGIVAKGKTIATSQQDLARANADLENTVEELESLAAYEADLHKQCDFLLKNFDIRQKARMDEMEAIQAAKA

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