NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068664_1356607

Scaffold Ga0068664_1356607


Overview

Basic Information
Taxon OID3300006380 Open in IMG/M
Scaffold IDGa0068664_1356607 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1200_B MetaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1178
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.539Long. (o)-110.798Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020180Metagenome / Metatranscriptome225Y
F026891Metagenome / Metatranscriptome196Y

Sequences

Protein IDFamilyRBSSequence
Ga0068664_13566071F020180GGAGGMSYDAKRWYISRCSCTKPILYQERDRYPLRCAKCGGHVYTEPRPPHFERLRPTPIVDFRAVLRVLGWCVLGLLGYIALCIYFIVLG
Ga0068664_13566072F026891GGAGGMALTIIAGDAIEIEANREDGRVWWAQNGAKRTRLALYAAQGVHIERVDTEVYLARDAVPVWTGEEWHREAAVYLYPTEKDELHVVWLNTHCGFGVTPKDAVLWEASSFGGPKNSESKIAVLKTGCYVEEYTYKRATPSNWYAITLDGAVRRLGTRSNIVALALRGDKDAKRLAEFKGWLSELTGELEVQDEL*
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