NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0099963_1029634

Scaffold Ga0099963_1029634


Overview

Basic Information
Taxon OID3300006413 Open in IMG/M
Scaffold IDGa0099963_1029634 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_2_0025m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3858
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (87.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001479Metagenome / Metatranscriptome687Y
F004869Metagenome / Metatranscriptome420Y
F007173Metagenome / Metatranscriptome356Y
F009691Metagenome / Metatranscriptome314Y
F040144Metagenome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0099963_102963410F004869GGAGGMTYDTAHYYAVQTFLEDDELCKIWNIIEIAMNREGYDVSNAELSMRLYDSELEENIEYDMENLLGSQSEGKDYDITFTTDDDYGSKVDALVDSMGVTDKEVSTTHRRKDMDLL*
Ga0099963_102963412F007173AGGAGMQTITKAKISRNNLMEYIHEDRDLLMGLQDDLSDMLYATGKFSIDLNEIVNEYMPHIPLYLIENQDEIKKVYSDRIDDDDNLFIFDRDKTPTSINLYVEWLD*
Ga0099963_102963413F001479AGGAGMSKEMLFLCDVYDAWLSKNKLPHRCASELLYGADTMDKLTVRQSYWLEDFISTWDVISQNT*
Ga0099963_10296346F009691AGGAGMKTELNSKDYVTFARRFVKETVATMDIEELRGIVTDHIHEMIQEGENTYGQDGAFEEMMSWDEDVFLSVAEDFDLEFEGV*
Ga0099963_10296347F040144AGGAGMKPQLHEFYITRKCTKYEYFTVKAESMEQAKYEAEEGYDYYDFDWEEFDYETVNIEEQEIPVQQLTLSGVLV*
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