NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0099654_10108386

Scaffold Ga0099654_10108386


Overview

Basic Information
Taxon OID3300006415 Open in IMG/M
Scaffold IDGa0099654_10108386 Open in IMG/M
Source Dataset NameAlgae and Fungi communities from freshwater lake (pre-blooming) in Auvergne, France - collected by filtering lake water, a 'reference genome' of the lake community
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterInstitut Pasteur, Lille, France
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)679
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Riboviria → Orthornavirae → Kitrinoviricota → Alsuviricetes → Tymovirales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Algae And Fungi Communities From Freshwater Lake In Auvergne, France During And After Algae Bloom

Source Dataset Sampling Location
Location NameAuvergne, France
CoordinatesLat. (o)45.49Long. (o)2.88Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066799Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0099654_101083861F066799N/ACSSDLSGFPGWYMAEYAERRLAARSQHGPMATMQNSGDRYTWALNSLRRAVVASLINHVTEEDTVAINGDDEAIDRYCDSDDFPDSPWEFKNLNGPVGEFSGFTLGGEVPEYSARGIQYRTMILESRDPTAQNKWLNYLGLLKHADHSSIEAMDVASAAHLHMHPDLFREALPEAMRGMFPDIFSTA*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.