Scaffold Ga0099654_10258828

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0099654_10258828

Scaffold Ga0099654_10258828

Overview

Basic Information
Taxon OID	3300006415 Open in IMG/M
Scaffold ID	Ga0099654_10258828 Open in IMG/M
Source Dataset Name	Algae and Fungi communities from freshwater lake (pre-blooming) in Auvergne, France - collected by filtering lake water, a 'reference genome' of the lake community
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Institut Pasteur, Lille, France
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	559
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Harpacticoida → Harpacticidae → Tigriopus → Tigriopus californicus	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Algae And Fungi Communities From Freshwater Lake In Auvergne, France During And After Algae Bloom

Source Dataset Sampling Location
Location Name	Auvergne, France
Coordinates	Lat. (^o)	45.49	Long. (^o)	2.88	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F028826	Metatranscriptome	190	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099654_102588282	F028826	GAG	MARVTMARAAVSNRPSAHSPLDNVTTPYNPIRLLKGAPPGQERVNFYTSELQISRNHHVDQKKKTNRHLFEVQTYGEYDYHHNFFDGAVDRDRKFWDPETVNSYVKQM*

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