Scaffold Ga0100176_1000088

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0100176_1000088

Scaffold Ga0100176_1000088

Overview

Basic Information
Taxon OID	3300006463 Open in IMG/M
Scaffold ID	Ga0100176_1000088 Open in IMG/M
Source Dataset Name	Human stool microbial communities from NIH, USA - visit 2 of subject 159207311
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	109152
Total Scaffold Genes	125 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	83 (66.40%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location Name	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F039198	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0100176_100008812	F039198	AGG	MKLTITEIQGTKYVQIYLTEDELQKKETKDLIKKYKQEKYSMAIFVTGKENYPEVLKKIVMKQVELNNNVC*

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