NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0082249_10013400

Scaffold Ga0082249_10013400


Overview

Basic Information
Taxon OID3300006466 Open in IMG/M
Scaffold IDGa0082249_10013400 Open in IMG/M
Source Dataset NameDeep-sea sediment bacterial and archaeal communities from Fram Strait - Hausgarten VI
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCenter for Biotechnology (CeBiTec), Bielefeld Univeristy
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1199
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Sediment → Deep-Sea Sediment Bacterial And Archaeal Communities

Source Dataset Sampling Location
Location NameFram Strait
CoordinatesLat. (o)77.978277Long. (o)0.163645Alt. (m)Depth (m)3500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043621Metagenome / Metatranscriptome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0082249_100134002F043621N/AMYKITLESTWTHNGITRNWIKYLKVNEIEEVFNFYKLDDILEIEEC*
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