NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0100226_1022745

Scaffold Ga0100226_1022745


Overview

Basic Information
Taxon OID3300006480 Open in IMG/M
Scaffold IDGa0100226_1022745 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_0075m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4432
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (73.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)75
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001479Metagenome / Metatranscriptome687Y
F001504Metagenome / Metatranscriptome681Y
F014025Metagenome / Metatranscriptome266Y
F020546Metagenome / Metatranscriptome223Y

Sequences

Protein IDFamilyRBSSequence
Ga0100226_102274514F001504N/AMTYDSEYNYAVQTFLEDDELIKIWNIIEIAMNREGYDVSNAELSMRLYDQELKSNIEYDS
Ga0100226_10227453F001479AGGAGMSKEMLFLCDVYDKWLDENDLPHRSACDILYGENACKLTGNQKYWLESFISTWDVIAEHT
Ga0100226_10227455F020546GGAGGMTTKTDPNQNYTIKEFYIKVKGDYGKEKNVRVNDMGDKLLTLITDLGWEYQRMSRSGQEVFDEIHQLLGTIKEDEVYMEI*
Ga0100226_10227459F014025GGAMKFDNYELSTLHYTLCHYIGSQKTQLDEDEIEWLHTLRKKVDNIMQLQAKYDMECG*
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