NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0100226_1044310

Scaffold Ga0100226_1044310


Overview

Basic Information
Taxon OID3300006480 Open in IMG/M
Scaffold IDGa0100226_1044310 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_0075m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1177
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)75
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014026Metagenome / Metatranscriptome266Y
F049045Metagenome / Metatranscriptome147Y
F060048Metagenome133N

Sequences

Protein IDFamilyRBSSequence
Ga0100226_10443101F014026AGGAGGMTLKETYINTLVDSMSMEDLQQYVANDMASFLYYCSESEVVNEFLIKVEHTTNEQFFNKFVKQNKGILL*
Ga0100226_10443102F060048AGGAGGMNASLEQNVETFSNHYVERFKFLLEGEMLNLQVKRHKDANSIMQEYLCNDGEVEDDNYQWLYVNYQFEEAN*
Ga0100226_10443103F049045GGAGGMTVAELVEKLLDFDGDEKITFYFLKNDTLTNCQVEDINSYGMGIELTIQDTTELFEEAA*
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