Scaffold Ga0100229_1098015

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0100229_1098015

Scaffold Ga0100229_1098015

Overview

Basic Information
Taxon OID	3300006481 Open in IMG/M
Scaffold ID	Ga0100229_1098015 Open in IMG/M
Source Dataset Name	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_2_0025m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Hawaii
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1346
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	22.75	Long. (^o)	-158.0	Alt. (m)		Depth (m)	25
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003020	Metagenome / Metatranscriptome	513	Y
F009812	Metagenome	312	Y
F011410	Metagenome	291	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0100229_10980151	F003020	GGAGG	MPDISKFKSVSVSTDTHDKLMSLAQNRFEVPVSVQKVIEFLLEKEIKKKNGRSNGRSKG*
Ga0100229_10980153	F011410	GGAGG	LKDLKIKLEWSTSNLLVWVILTMGIGLMIVNIVTMINMYSVIETMWLEIQQVKETNISLYQFIQEHRDDFN*
Ga0100229_10980155	F009812	N/A	MIEEFEIEWIPEDTGAPYEADDVFTELPAHTVDKLCKAKFGHTNWARMGLMTPEDLLGNPHEFDYENGIIY

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