Basic Information | |
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Taxon OID | 3300006484 Open in IMG/M |
Scaffold ID | Ga0070744_10002075 Open in IMG/M |
Source Dataset Name | Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6048 |
Total Scaffold Genes | 17 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (23.53%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 6 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Columbia River Estuary | |||||||
Coordinates | Lat. (o) | 46.234 | Long. (o) | -123.9135 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000957 | Metagenome / Metatranscriptome | 821 | Y |
F001923 | Metagenome / Metatranscriptome | 617 | Y |
F003583 | Metagenome / Metatranscriptome | 478 | Y |
F005588 | Metagenome / Metatranscriptome | 395 | Y |
F006659 | Metagenome / Metatranscriptome | 367 | Y |
F042341 | Metagenome / Metatranscriptome | 158 | N |
Protein ID | Family | RBS | Sequence |
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Ga0070744_1000207512 | F005588 | N/A | MPDPLAHSPDMITTIRPNKMPAFWWLVPWAYARTLHMSANAVKAYADRLDDILDIQRGIIEQQAADIRLLKARVRDQDDAIIKGTAITPDAYPHE* |
Ga0070744_1000207513 | F000957 | N/A | MSSFQHLEGMRNLLIEIYEVNERIMTGDICSAKAAIASTNVKKILAHYHEALHEDGATKVSLQAYVAAGGWVGIQYSYELDGFEVAGSQVPRRV* |
Ga0070744_1000207517 | F006659 | N/A | MKKDIKSPSEYRIIADSSYIVLPDQKVARLLTPTVRNGVTYYNLFVPDYTRMSLADIEATIKAGEVTKST |
Ga0070744_100020755 | F042341 | N/A | MSSPRPKSDPPAVQYGEPHFTFRVLGRVKPTHDPKCPTPFGYCWKGFGDIHVDPRQSEEEMIDTVAHELLHDALPYLDEEAVEKAANRIASAMWKLGYRRTVIE* |
Ga0070744_100020757 | F001923 | N/A | MSAPLDPESIPKELKDGVIASILGGLAMTARLLLSQEPVSVGWVIRRVLAAAITAALVGYAITDHIESPGLRMGVVGAAGYAAPECLDYLMRYIKNKGDAEVGPAKKPHGKSKAPGKAKRKR* |
Ga0070744_100020758 | F003583 | N/A | MAKAKPQAKPSGSANLLLAVTLLTVFAGVSALSSAYISGYVLDTLQSRDALVMIVTDAGIKSDSATVEQGLSAATLALKAVRDLGWALAVGCLGVGLAVFLRSRRQKAS* |
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