NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070744_10022071

Scaffold Ga0070744_10022071


Overview

Basic Information
Taxon OID3300006484 Open in IMG/M
Scaffold IDGa0070744_10022071 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary, USA - metaG S.535
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1890
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002398Metagenome / Metatranscriptome563Y
F010618Metagenome301N
F019834Metagenome227N
F027179Metagenome195Y
F060914Metagenome132N

Sequences

Protein IDFamilyRBSSequence
Ga0070744_100220711F010618N/AQELEKKYEQYSQDTEVVLAIHSKNEFNPEVNLDYIDEVLHPALDTFSGYICRIVLCGEIEQED*
Ga0070744_100220713F019834GAGGMKELKFTITGTIFVPDNAEYEYDFENQIYTFKINDKTYSLIAGLEADDKEIIVTDENLKSHDIRPVEYEDAYFED*
Ga0070744_100220714F027179N/AMRMPTLKIEKFIYMADGLFLYEKENSYVVMDQNDNVLKEAKTSKTCSSYISKTLQSRRAAERYAIEEINKSKV*
Ga0070744_100220715F060914AGCAGMQLKRLIKVRSDISSSIFPIELYQVDDYFTAEENGIELFRFKSQHLCSIKAKELIRRRKNEKNAKIIQDINELKAQGIL*
Ga0070744_100220716F002398GGAMISLISIFLLTSLDPIKNFVSLKTYISENAKAHCYVYFINEDIPDFPRVNVIEKSKFDFFAYLDTIGIEHSKVGSYYFFNKKNK*
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