NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0100228_1022329

Scaffold Ga0100228_1022329


Overview

Basic Information
Taxon OID3300006565 Open in IMG/M
Scaffold IDGa0100228_1022329 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_2_0125m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20520
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (77.78%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007944Metagenome / Metatranscriptome342Y
F015023Metagenome258Y
F034352Metagenome / Metatranscriptome175Y
F037421Metagenome / Metatranscriptome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0100228_102232912F037421AGGAGMSNKPEHSSYFKELIRRLKELRVSADNGEIIIPNDNEDILEFNEMDLPLTMESFRKMSGEEKEALFLWLNKDDMPQA*
Ga0100228_102232919F034352GGAMKYKVIKDYPTASGILYENEVVKEDGNSTLKGHIRVKDNMGRIWFVPKETIKKIK*
Ga0100228_102232925F007944N/AMKMENWSGYEKYIVMLTGYNASIRGVQLGYRAYMDFKRVKEALHLISKSGDSYSYESNIYKRPITSSRATQILMKIEECKWDEDIRLVAKQIKAGDMISPVR*
Ga0100228_10223297F015023AGGMLYSSMKLRSKKMVLKKDIKDGVLKFMEHLNNTMDKPDGYEYELNTRGSKYFKVEMTTRGTSRSVYCFIEKATGIILKSAGWRAPAKGPRGSVLIVDSYKHSDWSGGWLYKVFGNVYGMIG*
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