NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0100228_1060078

Scaffold Ga0100228_1060078


Overview

Basic Information
Taxon OID3300006565 Open in IMG/M
Scaffold IDGa0100228_1060078 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_2_0125m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1439
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021855Metagenome217N

Sequences

Protein IDFamilyRBSSequence
Ga0100228_10600781F021855N/ARNSSPAVIPTDNFTNSDLEPFHYASDIAKRPVGATLSSGLFSGTSDSPIYMRLNTLFSTIFGRRTGVGLKFMSNGVELDGKTKVSSLVARTGVAVEPQNDYRDTNTNTQKELNLHPETKIDTEKRSRTNFYTNTSYTVRGYNVKNGYAYAGPRIKSLNTFMFSAFSANNAITLEGGTGAGEIILENEHGVLQHPQSDSFSARVNSFTNLRFGNTNTGTDKIIQEDGSNIINETAGTDTDDGVDEFLLEENVDGTTLRISDFTGTTTNPNHKTNLAFPTEVTKSA*
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