NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074048_13387658

Scaffold Ga0074048_13387658


Overview

Basic Information
Taxon OID3300006581 Open in IMG/M
Scaffold IDGa0074048_13387658 Open in IMG/M
Source Dataset NameSoil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1619
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada

Source Dataset Sampling Location
Location NameLaval, Canada
CoordinatesLat. (o)45.54Long. (o)-73.72Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018030Metagenome / Metatranscriptome237N
F020741Metagenome / Metatranscriptome222N
F058291Metagenome / Metatranscriptome135N

Sequences

Protein IDFamilyRBSSequence
Ga0074048_133876581F058291N/ATSKFILPYEPGYTGHWEAERRRKETREWLRQREREIAAPSIVPEMPVRDATLTPKRG*
Ga0074048_133876582F020741GAGMARRKSPLLCTLLFVLIAQPAAAQGGAFSQSPNRDAGQRAPANGAQIECGPIGADRYRPGVDRRLGGRWLDNNGLKVVCDRRRS*
Ga0074048_133876583F018030GGAGMNAPTSLDETIRRGQDILWSALPPGVARTSAVVELKELLWSTQTREALALASDNYLAFALRESRMALADASAWPDKTLSALWTILDDPALNAALGIPHDFCANAARRDYPWR*
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