Basic Information | |
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Taxon OID | 3300006600 Open in IMG/M |
Scaffold ID | Ga0079065_1037513 Open in IMG/M |
Source Dataset Name | Active sludge microbial communities from Illinois, USA, of municipal wastewater-treating anaerobic digesters - ADurb_Cas_01_SludgeMetaT (Metagenome Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1146 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon | (Source: UniRef50) |
Source Dataset Ecosystem |
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Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Illinois | |||||||
Coordinates | Lat. (o) | 40.1191 | Long. (o) | -88.1952 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F004383 | Metagenome / Metatranscriptome | 440 | Y |
F031138 | Metagenome / Metatranscriptome | 183 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0079065_10375132 | F031138 | AGAAGG | MTKRNNYVGPCATACKPGAGTDTQNGTFDRILVAATEHAAREVGLPGRADRRIACRSCGAPTASSDEICRDCADAMRAERSEALSALCRVHRVRYVEDLPVSAIEEMQAEWGRC* |
Ga0079065_10375134 | F004383 | GGAG | MTDILERAFMARIRADEYREALAALQREFDERPDVIEIKRLIDRCEEERRTCIEQAKAAGISKQGSFLLKIRTRKQRTVIPKLFFAKHGAEAFVECATIAIGKAETLLGKAALDDCCEVEVKEIGVSVEYERSE |
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