Scaffold Ga0074057_12120482

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0074057_12120482

Scaffold Ga0074057_12120482

Overview

Basic Information
Taxon OID	3300006605 Open in IMG/M
Scaffold ID	Ga0074057_12120482 Open in IMG/M
Source Dataset Name	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAB (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1468
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada

Source Dataset Sampling Location
Location Name	Laval, Canada
Coordinates	Lat. (^o)	45.54	Long. (^o)	-73.72	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F081550	Metagenome / Metatranscriptome	114	Y
F092010	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074057_121204821	F092010	N/A	LKRLGLIIVLIAAAALAGCGGGDDSGNSSGTTAALSACNINGKQQDLGASYVTSIDVAGVSCGQAEKVVLGYHQCRLANGGAGGTCKTAVEGFTCTEGARQSVPGVQFNATADCRKGDAEIKSTYTQNF*
Ga0074057_121204822	F081550	AGGA	LRKSLTGALALAGLLVALLAPSGSASPVAHTASFSPCDISGKQQDLGASYVTSLKVQGVSCTKGEKLIKAYHQCRHQAGGPAGTCSATLLGFKCKDGGRTGVPNVQYNATAKCHKVSNASKRVKSSYTQND*

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