Scaffold Ga0101438

Basic Information
Taxon OID	3300006615 Open in IMG/M
Scaffold ID	Ga0101438_101290 Open in IMG/M
Source Dataset Name	Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ04 time point
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Australian Centre for Ecogenomics
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006615 Open in IMG/M

Scaffold ID

Ga0101438_101290 Open in IMG/M

Source Dataset Name

Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ04 time point

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Australian Centre for Ecogenomics

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	21070
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (66.67%)
Novel Protein Genes	12 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	10 (83.33%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

21070

Total Scaffold Genes

33 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

22 (66.67%)

Novel Protein Genes

12 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

10 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location
Location Name	Port Hacking, Australia
Coordinates	Lat. (^o)	-34.1192	Long. (^o)	151.2267	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Port Hacking, Australia

Coordinates

Lat. (^o)

-34.1192

Long. (^o)

151.2267

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F008747	Metagenome / Metatranscriptome	328	Y
F032291	Metagenome / Metatranscriptome	180	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0101438_10129010	F008747	N/A	MAPVEESIARPAGSEGETAQDVGVPPLTVGVTVVIAVPFVRVCEFGL*
Ga0101438_10129012	F008747	AGG	VTAVGVPLIAPVDESNDKPTGREGETDQDVMVPPLTVGVVVVIAVPFVNVNEFGL*
Ga0101438_10129013	F008747	AGGA	VTAVGVPLIAPVEASMASPAGSDGETDQVVTVPPEEVGVAVVIVVPFVSVNVLGL*
Ga0101438_10129014	F008747	AGG	VIAVGVPLSAPVDESSAKPAGREGLIDQDVTSPPLLDGVTVVIAVPLVKAKELVE*
Ga0101438_10129015	F008747	AGGAGG	VTAFGVPLMAPVEESKDRPEGRDGDTDQDVIVPPFTVGVTVVMAVPLVRVNEFGL*
Ga0101438_10129016	F008747	AGG	VTAVGVPLIAPLDESSDKPAGSDGETDQDVIVPPFTVGVTVVIAVPLVSVNELGL*
Ga0101438_10129017	F008747	AGGA	VIAVGVPEIAPVDESRESPAGSPGDTDHEVTVPPLNVGVVVVIAVPVVKVNEFGL*
Ga0101438_10129019	F008747	N/A	VAEEDTAVGVPLIAPVEESKDKPAGKEGETDHEVTVPPVIDGVTVVIAVPLVNVNEFGL*
Ga0101438_10129021	F008747	AGG	VTAVGVPLIAPVDESNDKPAGREGETDHEVIAPPFAVGVAVVMVVPLVREYEL*
Ga0101438_10129022	F008747	AGGA	VIAVGVPDIAPVEASKDKPAGSDGETDQEVIVPPFTVGVTVVIAVPLVRENELGL*
Ga0101438_10129024	F032291	AGGA	VTAVGVPLIAPVDESKDKPAGSEGDTDHEVMVPPLTVGVVVVIAVPLVSENELGLYVSDDGATSLTTMVTVAVSLPPVLLAVMV*
Ga0101438_10129025	F032291	AGG	MAEGVPEIAPVDESKDKPAGSDGDTDQEVIVPPLTVGVTVVIAEPLVSVNELGLYAKDDGATSLMTMVTVAVSLPPVLLAVMV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0101438_101290

Overview

Ecosystem & Geography

Associated Families

Sequences