NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0101444_103693

Scaffold Ga0101444_103693


Overview

Basic Information
Taxon OID3300006620 Open in IMG/M
Scaffold IDGa0101444_103693 Open in IMG/M
Source Dataset NameMarine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ10 time point
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterAustralian Centre for Ecogenomics
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4342
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (73.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location
Location NamePort Hacking, Australia
CoordinatesLat. (o)-34.1192Long. (o)151.2267Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003834Metagenome / Metatranscriptome466N
F009561Metagenome / Metatranscriptome316N
F027901Metagenome193Y

Sequences

Protein IDFamilyRBSSequence
Ga0101444_10369311F003834AGGAMSSSKTPIRQDEKDYLDHFIETKYDDRKNVLKTEMQDTIDKEAEDNFEAFKDKLKISKMHNEVRTLYEDHKKFANEMDSILLEKKGKLDNAINVLEDKLDQWKKIRKWKNDIERSLIKEPDELDRLLKKLCHEETERDYYGGPRGKAIQMLDMSKEYCKNLLNAGQSLTTVWGVLNTEMGKEKINTNTIPKPEFLAITK*
Ga0101444_1036933F009561AGGAGMXXXXXXXXXVISNNKGKAREIEKLENQISDAKESVSVLGGAIACGFLHDKHSLILQEWIVEYKQLIEQLETHLTEMRTHG*
Ga0101444_1036938F027901GGAMTDKVDCAIWIWDNDMQRKKRIRLQTLLNRVNHTLRHENITYFALEKDRNKFAKECRT*
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