Scaffold Ga0101442_117130

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0101442_117130

Scaffold Ga0101442_117130

Overview

Basic Information
Taxon OID	3300006622 Open in IMG/M
Scaffold ID	Ga0101442_117130 Open in IMG/M
Source Dataset Name	Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ08 time point
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Australian Centre for Ecogenomics
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2220
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location
Location Name	Port Hacking, Australia
Coordinates	Lat. (^o)	-34.1192	Long. (^o)	151.2267	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001607	Metagenome / Metatranscriptome	664	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0101442_1171304	F001607	GAGG	MPVIANNLSLTAGTTSVNVFDNTNYQFVNELTDLRINLATTAANDAVQGSNVNYRFTINNTEFADDAIVPALVTGQPFGDNGSYRTNAVTATGQSRNRPLLTITNNTSGTVVVKYYVFISQQA*

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