NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075522_10167914

Scaffold Ga0075522_10167914


Overview

Basic Information
Taxon OID3300006638 Open in IMG/M
Scaffold IDGa0075522_10167914 Open in IMG/M
Source Dataset NameArctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1129
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location NameUSA: Barrow Environmental Observatory site, Alaska
CoordinatesLat. (o)71.299Long. (o)-156.61Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036810Metagenome169Y
F045709Metagenome / Metatranscriptome152Y
F070426Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0075522_101679141F045709GGAGGVNLTPSQKGSFLAGIGLWVLIWASIWKADDIAIAMHIQRWFNSARCIRWIGQHKSTSLLGTEVINYGTHGLDPLGVSFSLGGTLVNVLFIY
Ga0075522_101679142F070426GGAGGMLLEMIVVTEASVLSASWIRRSRMRRRQILMGGSTPEITLPFLDLYLKQQTTNPTRLQTFAAQRLASICRRAVHTKAFELLALKLIQSASRRSRRNSEISKVEVIL*
Ga0075522_101679143F036810AGGAGMPQPERTRVSRWTRIRSFAAHKYKAVQLSIERRSFENKLERIVRAALANQSVGLPAGHPQYKLLRQQADSTCANFAHRWNINPDLLDAQIPATRKLKSLADPPSKPEPAVLVSLGIGGAAALFFLIGVLAGLTSVGYHLIGGR*
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