NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079301_1003973

Scaffold Ga0079301_1003973


Overview

Basic Information
Taxon OID3300006639 Open in IMG/M
Scaffold IDGa0079301_1003973 Open in IMG/M
Source Dataset NameDeep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6214
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (79.17%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)40.178Long. (o)-81.073Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002071Metagenome / Metatranscriptome596Y
F003690Metagenome / Metatranscriptome473Y
F004840Metagenome / Metatranscriptome421Y
F008132Metagenome / Metatranscriptome338Y
F014142Metagenome / Metatranscriptome265Y
F015730Metagenome / Metatranscriptome252Y
F049621Metagenome / Metatranscriptome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0079301_100397316F004840N/AMYKLTCAYDSNAPHWSAEYESELGAWENFFLFTDWGFADEYSTVNIYTPTGKCYTRVFYREGRKVITK*
Ga0079301_10039732F014142AGGAGMSHSVSVVVEPTHPMSSSNTKDKNIFRLANGNYISRMAYVYMVADKGLLSHRYLSPNESKWVMSNRKDN*
Ga0079301_100397320F049621AGGAGMAELKYFNALINSVVGNDEERKAAKEYLAEVDPEIWSEELQA*
Ga0079301_100397324F002071AGGAMTTLEIGQTITTAKSGVVGVIKAVDNHPSGIARVLLDVDGSERWTSVEV*
Ga0079301_10039735F008132GAGGMMTKWDTIQADVADAYTYLDEEEAYNNALDNEDEEDVFGFAKAVEIDHLTDEQLDEIGKMFGDN*
Ga0079301_10039736F003690N/AMTINGFELIISNEYGIEFDSFLGSIYLPWHTILITTALLIAYKIYKRKKNK*
Ga0079301_10039739F015730N/AMLTQKTLDKIVYEYQHGGVKNNHPELTTHERKALLKHLFSLPTYCSCCVKG*
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