Basic Information | |
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Taxon OID | 3300006639 Open in IMG/M |
Scaffold ID | Ga0079301_1003973 Open in IMG/M |
Source Dataset Name | Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6214 |
Total Scaffold Genes | 24 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (79.17%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Ohio | |||||||
Coordinates | Lat. (o) | 40.178 | Long. (o) | -81.073 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F002071 | Metagenome / Metatranscriptome | 596 | Y |
F003690 | Metagenome / Metatranscriptome | 473 | Y |
F004840 | Metagenome / Metatranscriptome | 421 | Y |
F008132 | Metagenome / Metatranscriptome | 338 | Y |
F014142 | Metagenome / Metatranscriptome | 265 | Y |
F015730 | Metagenome / Metatranscriptome | 252 | Y |
F049621 | Metagenome / Metatranscriptome | 146 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0079301_100397316 | F004840 | N/A | MYKLTCAYDSNAPHWSAEYESELGAWENFFLFTDWGFADEYSTVNIYTPTGKCYTRVFYREGRKVITK* |
Ga0079301_10039732 | F014142 | AGGAG | MSHSVSVVVEPTHPMSSSNTKDKNIFRLANGNYISRMAYVYMVADKGLLSHRYLSPNESKWVMSNRKDN* |
Ga0079301_100397320 | F049621 | AGGAG | MAELKYFNALINSVVGNDEERKAAKEYLAEVDPEIWSEELQA* |
Ga0079301_100397324 | F002071 | AGGA | MTTLEIGQTITTAKSGVVGVIKAVDNHPSGIARVLLDVDGSERWTSVEV* |
Ga0079301_10039735 | F008132 | GAGG | MMTKWDTIQADVADAYTYLDEEEAYNNALDNEDEEDVFGFAKAVEIDHLTDEQLDEIGKMFGDN* |
Ga0079301_10039736 | F003690 | N/A | MTINGFELIISNEYGIEFDSFLGSIYLPWHTILITTALLIAYKIYKRKKNK* |
Ga0079301_10039739 | F015730 | N/A | MLTQKTLDKIVYEYQHGGVKNNHPELTTHERKALLKHLFSLPTYCSCCVKG* |
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