NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079301_1004777

Scaffold Ga0079301_1004777


Overview

Basic Information
Taxon OID3300006639 Open in IMG/M
Scaffold IDGa0079301_1004777 Open in IMG/M
Source Dataset NameDeep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5580
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)40.178Long. (o)-81.073Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000671Metagenome / Metatranscriptome945Y
F002060Metagenome / Metatranscriptome597Y
F023339Metagenome / Metatranscriptome210Y

Sequences

Protein IDFamilyRBSSequence
Ga0079301_10047771F023339N/AEGNTSSKKKGSQRNGGETCKQLRAYKKNKAGVMISIVGFGRPKFGNSGPSKAAPSKSKSEKCPTCGK*
Ga0079301_10047778F000671GAGGMEKILCYSCNKSKNKLDAKKSSLLPINLLICESCISAKLEPRWVVILAGRSQGPDYVKEFIIKRRYIGNEITASAL*
Ga0079301_10047779F002060N/AMDYTSIVIAISAAVLSGMGTAIIAGLKENKREKVRQHEREQDHLKLEVKDLKIELYKIERELTEWKDKYYNAIQELIGVKAELEETLLKLTFIDHHIEDLHELDREF*
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