Basic Information | |
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Taxon OID | 3300006639 Open in IMG/M |
Scaffold ID | Ga0079301_1016810 Open in IMG/M |
Source Dataset Name | Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2609 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Ohio | |||||||
Coordinates | Lat. (o) | 40.178 | Long. (o) | -81.073 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002406 | Metagenome | 562 | Y |
F006182 | Metagenome | 379 | Y |
F010618 | Metagenome | 301 | N |
Protein ID | Family | RBS | Sequence |
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Ga0079301_10168102 | F002406 | N/A | MENLKWIRAMADRLKDTLSSEYDDETKDLIIRAFMQGLFQHPGIVEELKSSSLIESDYFEDKE* |
Ga0079301_10168103 | F010618 | GAGG | MTLKDLILKLQELDKKYEQYSKDTEVVIAVHSKNEYNPEVSLDYIDEVLHPALDTYSGYICRIVLCGEIEEED* |
Ga0079301_10168106 | F006182 | GAGG | MKINFKVTGTMEIPDDVIKHYDVAGKLYALEFNDIMYMLQMCIVAEAGAGGYDIVHQFEEMENHSITNVRYDDAEFFED* |
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