Basic Information | |
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Taxon OID | 3300006642 Open in IMG/M |
Scaffold ID | Ga0075521_10041977 Open in IMG/M |
Source Dataset Name | Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1969 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Barrow Environmental Observatory site, Alaska | |||||||
Coordinates | Lat. (o) | 71.299 | Long. (o) | -156.61 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F017182 | Metagenome / Metatranscriptome | 242 | Y |
F053497 | Metagenome / Metatranscriptome | 141 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0075521_100419771 | F017182 | N/A | ATIISNFILLLLAACLFLLIRHNGRLLGDQAAESRKALALRDLQLQKLMSALSGQARSDIIAIKTNSRLLLENYGGFLPRQGHEYAEQMKETAAQMERLRQDLVGSPPSNGNGRAA* |
Ga0075521_100419772 | F053497 | GGAGG | MPSVHINNVGGMAIVGCAGRFVRNDAALKLRDAVKSQANARVVVLDLTKMEAIGGGGLGMLLLLQGWAQDNDIRFKLFNPTRPVLDKLKHVDFEIVRTA* |
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