NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075521_10050119

Scaffold Ga0075521_10050119


Overview

Basic Information
Taxon OID3300006642 Open in IMG/M
Scaffold IDGa0075521_10050119 Open in IMG/M
Source Dataset NameArctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1819
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location NameUSA: Barrow Environmental Observatory site, Alaska
CoordinatesLat. (o)71.299Long. (o)-156.61Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047997Metagenome149Y
F051569Metagenome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0075521_100501192F051569AGGAMTIITESAALTGRSMANTTYTAAPLDQVNAWVSQWGTSLQILGASVLAICVVLVGIKLGAKSVASQGTSTGHREAIGSIVGLVIAGVLIGAALIIVPIFIGVGSNSGTTPPAPAPAATGGG*
Ga0075521_100501193F047997GGAGLTGNDDHVIYSDDYTRLFTYQSRQFTAGDLSLKAINGVQWNAAVPAAVIAVAVTVVTATGLWVVGFSPWWSVLLFPVPALVVYVRMAKDRAGGLTESEKLRLAWNYRYSQPRDVLGLGENTEPTDFAWDVIFWLPAAKLSAIGAPR*

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