Scaffold Ga0075521_10050119

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0075521_10050119

Scaffold Ga0075521_10050119

Overview

Basic Information
Taxon OID	3300006642 Open in IMG/M
Scaffold ID	Ga0075521_10050119 Open in IMG/M
Source Dataset Name	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1819
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location Name	USA: Barrow Environmental Observatory site, Alaska
Coordinates	Lat. (^o)	71.299	Long. (^o)	-156.61	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F047997	Metagenome	149	Y
F051569	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075521_100501192	F051569	AGGA	MTIITESAALTGRSMANTTYTAAPLDQVNAWVSQWGTSLQILGASVLAICVVLVGIKLGAKSVASQGTSTGHREAIGSIVGLVIAGVLIGAALIIVPIFIGVGSNSGTTPPAPAPAATGGG*
Ga0075521_100501193	F047997	GGAG	LTGNDDHVIYSDDYTRLFTYQSRQFTAGDLSLKAINGVQWNAAVPAAVIAVAVTVVTATGLWVVGFSPWWSVLLFPVPALVVYVRMAKDRAGGLTESEKLRLAWNYRYSQPRDVLGLGENTEPTDFAWDVIFWLPAAKLSAIGAPR*

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