Scaffold Ga0099769_1279736

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0099769_1279736

Scaffold Ga0099769_1279736

Overview

Basic Information
Taxon OID	3300006645 Open in IMG/M
Scaffold ID	Ga0099769_1279736 Open in IMG/M
Source Dataset Name	Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge MT KNB_T0_3 (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1114
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge → Active Sludge And Wastewater Microbial Communities From Klosterneuburg, Austria

Source Dataset Sampling Location
Location Name	Austria: Klosterneuburg
Coordinates	Lat. (^o)	48.3	Long. (^o)	16.2	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F052619	Metagenome / Metatranscriptome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099769_12797361	F052619	GGA	MNTPVYRPVHKFSRTVEGAYDIICDGITPSLSGLIFQLSSLPSFTDFTNLFDMYRITKIEIDWVPEYTELTDAALVSNAVNVRFNSVVDISDAAAPLAVNDLLQYETVKSTSITKGHSRSWKPCFLMNALVPCSCWLPTSAPNERHYAIKVAVPPTGVAMTFRSRVKFFVECANVN*

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