Basic Information | |
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Taxon OID | 3300006654 Open in IMG/M |
Scaffold ID | Ga0101728_101661 Open in IMG/M |
Source Dataset Name | Combined Assembly of Gp0125100, Gp0113270, Gp0125099 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | The Marine Biological Laboratory |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6205 |
Total Scaffold Genes | 16 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (62.50%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Abyssal Plane → Marine → Deep Marine Subsurface Microbial Communities From Mid-Atlantic Ridge (Iodp Expedition 336) |
Source Dataset Sampling Location | ||||||||
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Location Name | North Pond, Atlantic Ocean | |||||||
Coordinates | Lat. (o) | 22.78 | Long. (o) | -46.09 | Alt. (m) | Depth (m) | 4350 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F006198 | Metagenome / Metatranscriptome | 379 | Y |
F011620 | Metagenome / Metatranscriptome | 289 | Y |
F013649 | Metagenome | 269 | Y |
F019388 | Metagenome / Metatranscriptome | 230 | N |
Protein ID | Family | RBS | Sequence |
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Ga0101728_10166112 | F011620 | GGA | MFDIILQTVLKLFGKKKPEPPTEEKNESLEALEKVEALDKIGEPS* |
Ga0101728_10166113 | F019388 | AGGA | MQTPNEQNPYLVETKNGQILKFNKIDADNEAATKQLDGDDVEVFHDGKLQYRLHGIEQGKLF* |
Ga0101728_10166115 | F006198 | GGA | MEVEXDXXCNNCNXTYTMXYDSXDIXTXQEEHAFHCAFCGILMEPYYDEFFEED* |
Ga0101728_1016612 | F013649 | N/A | MSNILDKKLSILERLPSSRRMREHDEAGKRSKKLKKLRKEHFREDWDADLWD* |
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