NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0031682_1172381

Scaffold Ga0031682_1172381


Overview

Basic Information
Taxon OID3300006695 Open in IMG/M
Scaffold IDGa0031682_1172381 Open in IMG/M
Source Dataset NameMetatranscriptome of deep ocean microbial communities from Atlantic Ocean - MP324 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)626
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Debaryomycetaceae → Meyerozyma → Meyerozyma guilliermondii(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameEast of Recife, Brazil, South Atlantic Ocean
CoordinatesLat. (o)-9.13Long. (o)-30.19Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063613Metatranscriptome129N

Sequences

Protein IDFamilyRBSSequence
Ga0031682_11723811F063613N/AYFILLTMNLITSLLKERGSERSASLFVGLALEGRSGLLALVVGGSTDLSLLLESLDGILVLPSDLVRQTTEASEVATRSESQHTEGLRADHTVDLIVRRRNSLEHLQVSESGGTTSGLVRKHSTDGSPEDLRGSAEVERTTSGVDVASLSKEVLVLELVSEVRTRDVDILTTNNNDLLSGQELLGNSGSETAQKVTLSVNHNSLLKHA

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