NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098073_1000307

Scaffold Ga0098073_1000307


Overview

Basic Information
Taxon OID3300006734 Open in IMG/M
Scaffold IDGa0098073_1000307 Open in IMG/M
Source Dataset NameMarine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18271
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (40.48%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameGulf of Mexico
CoordinatesLat. (o)28.867Long. (o)-90.467Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030930Metagenome / Metatranscriptome184N
F035747Metagenome171Y
F080645Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0098073_100030715F080645N/AMNLTSEQISNLCQAHCYRVIDNMDLDDLISYAVQMMYSSFDKNPGQNDTDIEMLIQDIWIAEDEDDDATSEFIAGVVGSDLADEIMKSTQF*
Ga0098073_100030716F035747N/AMAITNYNAQRDFMRRMIRSYEQDLLQLINETPDYPGGDWAKDDLKQLEYLRLKTFSDNKQTITF*
Ga0098073_10003072F030930N/AMYATLILTVVHEVPSEDLVANRYCVGFSLDDPRFQGFDIDRWAEPEMRAILMRSLIDEWAERALGIIGCEEIAGSVQWERR*
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