NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098073_1000342

Scaffold Ga0098073_1000342


Overview

Basic Information
Taxon OID3300006734 Open in IMG/M
Scaffold IDGa0098073_1000342 Open in IMG/M
Source Dataset NameMarine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17414
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (33.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameGulf of Mexico
CoordinatesLat. (o)28.867Long. (o)-90.467Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005010Metagenome415Y
F019760Metagenome / Metatranscriptome228Y
F024891Metagenome / Metatranscriptome204Y
F053302Metagenome / Metatranscriptome141Y
F055664Metagenome / Metatranscriptome138N

Sequences

Protein IDFamilyRBSSequence
Ga0098073_100034217F053302N/AMDLGFIIEQLQRTEATDQDMRIAKGEWKIITKWSEAKEQIRWQSRKK*
Ga0098073_10003422F005010AGAAGMIRKHKHIREVEKYLRMLELDQINLTIQASRFGWNDEIQNQLTNSALLIRKYQRRLRLIRM*
Ga0098073_100034224F024891N/AMIIVEENTTAQIKMYLRDFTTESFEMEIISEDQRKEVVDQAISGTYDDFRKTFSFSYDVSSLVAENFYVVKIWEVGKIKLLSQDKMYIIPSGSEVATYQPKLATTEKVMNNEFKIYGE*
Ga0098073_100034227F019760N/AMGEKGYGAIYGSTWWGSGDAFTNTIGWGSAMFYILDPAQFQNRALEDGATMEAFECVSKSLRRYPQADRGRQLMDAYDVRVVAAGGDTEARTCTINELNE
Ga0098073_10003424F055664N/AMSKSDQILINRKNLEMLFSILTQVHLRGQLSRDEQIFVGKFVDLPPAPTTPNRSQRRLNQKIINQIIREEQKKAKDKK*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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