Scaffold Ga0098073

Basic Information
Taxon OID	3300006734 Open in IMG/M
Scaffold ID	Ga0098073_1000518 Open in IMG/M
Source Dataset Name	Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006734 Open in IMG/M

Scaffold ID

Ga0098073_1000518 Open in IMG/M

Source Dataset Name

Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12963
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (20.83%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (22.22%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

12963

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (20.83%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (22.22%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Gulf of Mexico
Coordinates	Lat. (^o)	28.867	Long. (^o)	-90.467	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Gulf of Mexico

Coordinates

Lat. (^o)

28.867

Long. (^o)

-90.467

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F002333	Metagenome	569	Y
F002738	Metagenome / Metatranscriptome	533	Y
F002985	Metagenome / Metatranscriptome	515	Y
F008128	Metagenome / Metatranscriptome	338	Y
F013517	Metagenome / Metatranscriptome	270	Y
F044444	Metagenome / Metatranscriptome	154	Y
F058089	Metagenome	135	Y
F073444	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098073_100051810	F073444	AGAAG	MNCHQHAVKDFDLQIEMNDLEMEMLKDHGEILPYNEGRVDELEQKKLKLLLGKRFHQNATNAYWYYLAKAGK*
Ga0098073_100051811	F001018	N/A	MSQITQTKLGKLNVFDLYKHYAALEQSLPLLTPESQELAKAELETCANLRSEKIDRIYYAMASHEDALERIKKENDLIVQAKRHHESQLRSLKNLLSYLRRVLPQDSNKITGRNYQFTLVKKKELTIEISSDPEFWHTKERELYCVAEEVTTTKRVVLRSMSGEVLSDRTEPSTKTKILPNIDAIRSAYQNGQQLPTGVKVTQEYSARSKRIYAEPRMELETSEYPGELLPED*
Ga0098073_100051812	F013517	N/A	MFETLLATVLPVMKDLLWAAAGMLLTYMLNKIQSQFN*
Ga0098073_100051813	F002738	N/A	MSIDSYGLSSEQYTEFFHKNVRFAAKLYLDTCNILTTEGVGNIDFKTVLDMYQEAVYTTNDDCRRYQKANNPEALKEATADIFAISPTREELMAEVQSLSAKVDGLTDYFAESLEAKNKGLSGLVD*
Ga0098073_100051815	F044444	N/A	MTDDILEYARQLATQPMKIGHLRYELDIPEDTHWELVKLAADLKMHQEDYAINVLIGHVESELDRKAQD*
Ga0098073_100051816	F002333	N/A	MNTQTQLELNAAQACIYTRTNITRAYQDFDDSEITGIYLRDDNCIVVRRDGTEQTYSRDLIKTAYSSYTHRLKDFFSYLGPNYRGPSVWHNNAYILFKGWNYSHALGHLTSNAQLQNHWADKFIHVSDPAKVTALLQSDQTDIGHLVAPDGMRLPNRAINLDRELDDSAEQEPVSSEPTCSCGSFQRQLNNLSTFQEEVQGFRPWCIHLTWFAKYRELLCKRTEVRNASPSGTPDKCVAWWYAPPTDHTSNGRFVLLHTKSGAQAPLTHWRTYKPKEVFTQHDAWDLFFNMMEAGYTPFPGTSLPQLKSAIKK*
Ga0098073_100051820	F058089	GAGG	MSTQAEDQFTLLFEDGKRKVLHQFQAIGTDEIVDEMIQFLRGIGHLELNIIERMNEISKQYLELYNSNKEVFLELQQDELNDVE*
Ga0098073_100051823	F002985	N/A	MSYVIACWRWGTPHAITANNETNKFELIPLDSDVALNKIFSHPYRAGAQQILTWINSNDEDLACKELSIQDESRFRK*
Ga0098073_10005188	F008128	N/A	MEPVYVPKLTVSFAVDLELEYNSFGGKTADEIAVALQDDLDDLLFELGHVTGVFTSCTSIQFDD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0098073_1000518

Overview

Ecosystem & Geography

Associated Families

Sequences