Scaffold Ga0098073

Basic Information
Taxon OID	3300006734 Open in IMG/M
Scaffold ID	Ga0098073_1000535 Open in IMG/M
Source Dataset Name	Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006734 Open in IMG/M

Scaffold ID

Ga0098073_1000535 Open in IMG/M

Source Dataset Name

Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12738
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (14.29%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

12738

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (14.29%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Gulf of Mexico
Coordinates	Lat. (^o)	28.867	Long. (^o)	-90.467	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Gulf of Mexico

Coordinates

Lat. (^o)

28.867

Long. (^o)

-90.467

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003038	Metagenome / Metatranscriptome	511	Y
F025977	Metagenome / Metatranscriptome	199	Y
F048942	Metagenome / Metatranscriptome	147	Y
F049563	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098073_100053511	F003038	N/A	MALSTEGLSAGGGSGLPKTISPGNNILKINSVTLDPFKFIDNAYHLMLHVETKPIDGFEGFSIDRDNPDAGHYKGQIGRVKASQYAFADGETKSGIKIQRDRSILIFLQNLCNTLGINDWMTAQHNQHETVEDFVKAFNDEAPFKDKYLEYCVAGKEYVGKTGYTNYDMWLPKADKGKYAYGEIEGGKVIIYDEAKHLKKLENKNVESFGNDDFSKTTSNDFSLD*
Ga0098073_100053521	F049563	GAG	MKMEKALIGSDELEKFYQKKFYFSYSGLNKLLYSPAMFYNHYVLNQREDSTDPHLVGGRVLHCLLFEPDNYDDYFISLPGKIPTDSQRKIIDTIFKKHLDIKNDSLSLEDYSQDILTELLTVNLYQSYKTDQQRLDKILTEENKEYFEFLKQSQDKTIVDQPTLDGCKVQVEI
Ga0098073_10005355	F048942	N/A	MIKVKELKDDAILDIKVNKSFYLMAKAASFTILQNMKIEDKGDEYFKQIMNEKYENLDNSQRSFYTIILLLAEIEKQATENNLFIEREIPEPGDEGYVEPTVQEDSTEDSN*
Ga0098073_10005357	F025977	GAG	MTEIFNLLIEKELTPNSFYVLYCIKEKIVPNKLVNKNLETQRLINQNWLTENLQLTDKSLIFITKIDGYFKKSKKKTSKDLMGDNFMQKIDAYVKLFPNKKLSSGKYARVPAKSLEGSFRWFFENYDYDWQTIFAATQKYINEYETKNYDYMRTSRYFLRKQNLDKSWDSDLATYCEFLNDTPDVDENPFEELIV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0098073_1000535

Overview

Ecosystem & Geography

Associated Families

Sequences