Basic Information | |
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Taxon OID | 3300006734 Open in IMG/M |
Scaffold ID | Ga0098073_1000535 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 12738 |
Total Scaffold Genes | 21 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (14.29%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Gulf of Mexico | |||||||
Coordinates | Lat. (o) | 28.867 | Long. (o) | -90.467 | Alt. (m) | Depth (m) | 5 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F003038 | Metagenome / Metatranscriptome | 511 | Y |
F025977 | Metagenome / Metatranscriptome | 199 | Y |
F048942 | Metagenome / Metatranscriptome | 147 | Y |
F049563 | Metagenome / Metatranscriptome | 146 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0098073_100053511 | F003038 | N/A | MALSTEGLSAGGGSGLPKTISPGNNILKINSVTLDPFKFIDNAYHLMLHVETKPIDGFEGFSIDRDNPDAGHYKGQIGRVKASQYAFADGETKSGIKIQRDRSILIFLQNLCNTLGINDWMTAQHNQHETVEDFVKAFNDEAPFKDKYLEYCVAGKEYVGKTGYTNYDMWLPKADKGKYAYGEIEGGKVIIYDEAKHLKKLENKNVESFGNDDFSKTTSNDFSLD* |
Ga0098073_100053521 | F049563 | GAG | MKMEKALIGSDELEKFYQKKFYFSYSGLNKLLYSPAMFYNHYVLNQREDSTDPHLVGGRVLHCLLFEPDNYDDYFISLPGKIPTDSQRKIIDTIFKKHLDIKNDSLSLEDYSQDILTELLTVNLYQSYKTDQQRLDKILTEENKEYFEFLKQSQDKTIVDQPTLDGCKVQVEI |
Ga0098073_10005355 | F048942 | N/A | MIKVKELKDDAILDIKVNKSFYLMAKAASFTILQNMKIEDKGDEYFKQIMNEKYENLDNSQRSFYTIILLLAEIEKQATENNLFIEREIPEPGDEGYVEPTVQEDSTEDSN* |
Ga0098073_10005357 | F025977 | GAG | MTEIFNLLIEKELTPNSFYVLYCIKEKIVPNKLVNKNLETQRLINQNWLTENLQLTDKSLIFITKIDGYFKKSKKKTSKDLMGDNFMQKIDAYVKLFPNKKLSSGKYARVPAKSLEGSFRWFFENYDYDWQTIFAATQKYINEYETKNYDYMRTSRYFLRKQNLDKSWDSDLATYCEFLNDTPDVDENPFEELIV* |
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