Scaffold Ga0098038

Basic Information
Taxon OID	3300006735 Open in IMG/M
Scaffold ID	Ga0098038_1000009 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006735 Open in IMG/M

Scaffold ID

Ga0098038_1000009 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	89324
Total Scaffold Genes	100 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (17.00%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (11.11%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

89324

Total Scaffold Genes

100 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

17 (17.00%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (11.11%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-12.999	Long. (^o)	-80.801	Alt. (m)	Depth (m)	30
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-12.999

Long. (^o)

-80.801

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014794	Metagenome / Metatranscriptome	260	Y
F017223	Metagenome	242	Y
F018622	Metagenome	234	Y
F018815	Metagenome	233	Y
F019032	Metagenome / Metatranscriptome	232	Y
F026716	Metagenome	197	Y
F036929	Metagenome	169	Y
F047925	Metagenome	149	Y
F074040	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098038_100000924	F017223	N/A	MISLPEDFVILKFFELGFYPKYNKFNNVYQCSCPICREGKSLGKKRRCYYIPKNENIFCHNCGWSGKPLRWIKEVSGTTDKDIIKELKDHVPDAEDIVERSEDTKPNFKVATLPKDSINLSDELQLNFYNSSNVVTAVRHLIKERRLDTAINKPSSLYVSLTDMVHKNRLVIPFFNERDEIEFYQTRTVLNKDNKVKPKYLGKVNAEKTLFNINRVSSDHDCVYIFEGPINAFFTKNSIAVAGITERGKSFTQRQEEQLNTTLKWYDKTWILDSQWVDQASLVKSEVLLKQGERVFIWPEKFGKRFKDFNDIAIACKIDEIKWSFIEKNTFDGIEGIVRLSEIKKYRNQTYLN*
Ga0098038_100000926	F026716	N/A	MKYRKRDIYAVETGDYVGKMFAVVKLKKDTIGCLILPQMENVDVPIESFDNGRNNDIIKFVEKLPKNVYSVVEAQYNKNENSNNRREQFNTPNISYSEDSVEEDGEPLGLPGK*
Ga0098038_10000093	F047925	N/A	MRVKGKTEVDVEITVSELVSALKEEVYAALNLPKPREGRVYIKDGRFVHEKSVYTTHSFEIEEDLGLAIEDDTDVFTAFHTIAEFLRD*
Ga0098038_100000958	F036929	GAGG	MTITTELSTSESEGVNDTIRGFEFINLNKCLNKSFNEYLLYITEHELKLTRKEKNKLGIHFIIKELISVCSKTSNKKWFYYKTDGKTIEHTLVKRIFNALPTNISYSEDSFDTFLEERDYISFKKKDTSAVSFYKFRLFLRRYELQQIESEFLSNINIKLSLLP*
Ga0098038_100000960	F074040	N/A	MKKTLQLFEQYKRLYSEQDEVEEVDVDVDVEADATDAEDIPPEPTGISPEGEVYVADLLTNAFIYAPAMQDINIAAQVNKEFGRTQPRKVIETIERLIEFSNEEVEQELEDLDAQ*
Ga0098038_100000989	F014794	N/A	MAMASIDNLAPTRSLIDLSAPDKGDFGLTDYDLTFLFDDILLIEYVDLSEMVPDGQEAIERNGILIPTNQITMAWRKGRVILAGPDAKFAKEGDIVLFPNNMGVTISGVSVPGKGSVDKGIFLNEERMFGICKEKDDNTKSSS*
Ga0098038_100000990	F018622	N/A	MIIQKAALDALLLDNVCEIRFARRIIKPGQAPTRRMLCTKSLSLLNSVNGRISLNYFPPKGPPKAYLGPDRLAVAWDIIMQDYRNINTLQCDLIQQIPANDDFWVYFNENIYPMSPGQKFNFMNS*
Ga0098038_100000991	F018815	N/A	MNVSLEKVTDFLKPFLLQEIVIRTDKKILKRGKLKIFQIKQYYINLTLEFNNSVKSYEIPYPFKMYHEEDRGILNYHLSSFIPNSQLTMVKFLDSSSKSKLYNNLVYILPSEKAIV*
Ga0098038_100000999	F019032	N/A	MGKEKLKIIKVIEHISKKNYAQAHKYLKSVVEDKITKRIDRATEKPLF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0098038_1000009

Overview

Ecosystem & Geography

Associated Families

Sequences