Scaffold Ga0098038

Basic Information
Taxon OID	3300006735 Open in IMG/M
Scaffold ID	Ga0098038_1000025 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006735 Open in IMG/M

Scaffold ID

Ga0098038_1000025 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	59449
Total Scaffold Genes	87 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	49 (56.32%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

59449

Total Scaffold Genes

87 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

49 (56.32%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-12.999	Long. (^o)	-80.801	Alt. (m)	Depth (m)	30
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-12.999

Long. (^o)

-80.801

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001215	Metagenome	746	Y
F008401	Metagenome	334	Y
F025263	Metagenome / Metatranscriptome	202	Y
F060451	Metagenome	133	Y
F099144	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098038_100002511	F099144	N/A	VAQFTFNRELGANPAGITRFRQYRTEDGGNITVNSITEDTTEGSEPRADLFAVTSSATGTGTVTLQAGSHAVGRIFIRSGTDGTVMGEVTAPKISNRQDVSFTFSVGASIENYLYVEKKDRSPCVYRVTYTAA*
Ga0098038_100002542	F060451	GGAG	VEHEQISIGLTLEDEFTLTRIRNGAKQLKGRDRDQYLWQRIFRMVCRERAYKAVIEELGIMVDPSVDVFDDKNEENHVT*
Ga0098038_100002544	F008401	GAG	MDSAKLLTIAQTAELLNCSQGFVRKRIALTEANQDGGWPKSIFVNLQPNGIKSLYRIKQEALVDYLTEQSEAKLDETPEAALAAPECTI*
Ga0098038_100002548	F001215	N/A	MVDRPFLRGARFTEGSAVINPATPDFSTLTQLVRVGDIPSEDAALVEDIWCVSNEAYPDDAGMYTAEFGLYVYAPNQSAPATSFPMMIGKYEIGLSGGKDGLPQPVILPSTNAPTPQTGNTNLLRPIMIGKMEGLYLEKGYILCVGYLGAGGSPTTFTPSGSLSASGVTWFAQGGFY*
Ga0098038_100002554	F025263	GAGG	MAINPNQISVAKIYPGNYANVLRYWHEEKTMQFENANGVSTSYTNQPVGGPVGVIFRPGWIAQQAIGYVDLSYQALGSVNQLEYYTQAYGSGVNSSPNGKSNVAFSDAAVIIPSPDFHKDVRQDIADGIQVPSGVYCYRASLRITGGDVVSSGIPGSEAAPALSLAPAVGEGYPTDNTVVSGGFAVSAVGANRRIPNGSVASTNIIDSSLLEATTEQTQWKLFATTNASPVVQGSGVYDPRAANNFLSGDEKALAICEVCWILPDSPPERQDVALQPDGLTESSVYTSTSPS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0098038_1000025

Overview

Ecosystem & Geography

Associated Families

Sequences