NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098038_1000094

Scaffold Ga0098038_1000094


Overview

Basic Information
Taxon OID3300006735 Open in IMG/M
Scaffold IDGa0098038_1000094 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35702
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (44.44%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-12.999Long. (o)-80.801Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017658Metagenome239Y
F033841Metagenome / Metatranscriptome176N
F034215Metagenome / Metatranscriptome175Y
F070220Metagenome123N

Sequences

Protein IDFamilyRBSSequence
Ga0098038_100009417F033841AGGMEELKPETIKIVTPNPTNFRYSYLVTPDEYKGVRKYKAECLIRKGTMMKDEMGKEVDAVEHIFEQLEGLLERWKVALKEHYPDRKFSLTKNKHGEPSLPYFLEDDYLVIRTSKKAGGVKQNGDVWTNPPVTFWANEDPLRLMTEEEKKEYEKISPSLEGQMSMKCSGYDAGANGVGIRCQPLQVIVRRHAEWTGSPDFEAEAQPSYEEKRTASSAADF*
Ga0098038_100009420F070220N/AMKCTKCGSQDIKVRETIYRKAEQTKGFRNKSSTPYVYRRRVCSCGHRFTTREYTIPDLIAFGKQGYLEMIDDLMPNK*
Ga0098038_100009422F017658AGGMNFMEELEKETQAMLKQINIRKIEKTNNAKKRIAELKKLIKFWEQDL*
Ga0098038_10000948F034215GGAGGMPSKKPSTKKETPENAPEQAIVSELGVNETNPVPEKSGDVVTGHGNTIHYS*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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