NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098038_1000640

Scaffold Ga0098038_1000640


Overview

Basic Information
Taxon OID3300006735 Open in IMG/M
Scaffold IDGa0098038_1000640 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15429
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (45.45%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-12.999Long. (o)-80.801Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053550Metagenome / Metatranscriptome141Y
F056918Metagenome137Y
F074050Metagenome / Metatranscriptome120Y
F077815Metagenome / Metatranscriptome117Y
F092866Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0098038_100064014F074050N/AMKRSYIKELVKEELQKIKNEAAGRAVSRGTVTDNTRLAMVLSSLGKRAKGSFQKRKVVSQVILKLAAALEITPNEVLRAYIDYKKDAKGEASTKVKKDD*
Ga0098038_100064015F077815GGAMDGKDLKNRIKQIIREEVNQLIKEESYKFGTLADPKDMDPNDPMVKVSGFATLNRSSIRGQVVDRLSGALATAKDAAKGGPNSYQAYKQLQDLISDAGILYKLIGAELDIANQLESKRLKGGRRSIPIPKQ*
Ga0098038_100064024F056918GGAGMKHLKVGDIVGAVFLGSSCECEVIEITDKKSKLYKLRMKSGTILPGVTWFKNLDAKQKKNKPWHIVKYLGHKEPKVIEKDSIQKADLDKAIAKQKKFLRGEIKD*
Ga0098038_10006404F092866N/AMGFHKRYIDDEQIIDIYRNNGCQAVIDWYQKGVDAIILSGELSETVHTLLNILEVDKIRGFNRISEVISEASLLKGNKN*
Ga0098038_10006407F053550N/AMTLYFQLKDQDRFNMKVTNKFQRKVLKRHPDASLTYTETGVRVMVGDTYLAEEFYLPETHDVEKAWEYAALACRTKQQFNRTHPMRMDLSDIESKINRINKRRGARHKRK*
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Institute for Fundamental Biomedical Research
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