Basic Information | |
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Taxon OID | 3300006735 Open in IMG/M |
Scaffold ID | Ga0098038_1002265 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8239 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (80.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | -12.999 | Long. (o) | -80.801 | Alt. (m) | Depth (m) | 30 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F003196 | Metagenome / Metatranscriptome | 501 | Y |
F018479 | Metagenome / Metatranscriptome | 235 | Y |
F028814 | Metagenome / Metatranscriptome | 190 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0098038_10022653 | F028814 | GGA | MGILMMLKEGGSLGIDTIGNLPIDEDIDLLPDTGTVSLNVDLQLMLWSDTGFALQYLDVDEMLLLGA* |
Ga0098038_10022656 | F018479 | AGGAGG | MSATIGDLIDRTYREYLEPMDDLTSYTTLGSTISASATTLNFNGALLSIEEEDAMDAGAIVEIGQELMICTDLNAVTNTLTVTRGARGTTAVQHLADSIIKIAPVFPRKNVFDAISDQIHNLYPTLFAVETVSVNAATGYTILGAHGTDQDNNNYLVAPLKAISQYTDFSAGSDSTGIQYRGVQVELIDLPNPFTYVDNAGTSRTKTYNNGPNVVHAVQTYNIASGHVVYITFKKKFLDVRDYDSDGDIEDTTLSQIGLETEYEPIIMTGVAAQLMSGRDIPTATADYISDQMGVTNFPVESASRIRNSLLAYQRALIQQARKDLRARYPEPVSINSISYG* |
Ga0098038_10022657 | F003196 | AGG | MYKFNVKEVTIDVSANGTQSSSVNTDGMLLTAIVFPAAMTGTAITFDFSVDGTNFYDVVETNGTEVSYTVSAGNVVRVDPSGWAFASSGFIRLTSGSTEAADRDIKLIFRTA* |
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